Pedigree Analysis - courtesy of Purina and Jerold S.
Bell D.V.M.
Using Relative-Risk Pedigree Analysis in Breeding
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Responsible breeders are selective about
choosing the best dogs to breed. Beyond considering physical
characteristics, temperament and colours, breeders try to avoid
passing on genetic disorders. Unfortunately, breeders don’t
always have the tools and information necessary to make educated
decisions.
It is more difficult to predict affected and carrier dogs for
some genetic disorders than others. Polygenic traits, meaning
two or more pairs of genes involved in heritability, can be
extremely challenging for scientists to develop a genetic test.
Hip dysplasia is an example of a polygenic disease for which no
genetic test has been developed. It is easier to predict
affected and carrier dogs for disorders having an autosomal
recessive mode of inheritance. In these cases, both parents of
an affected dog are carriers, even though they may appear
normal. As the number of carriers increase, so will affected
dogs. Fortunately, it is possible to evaluate pedigrees for
recessive trait risk and use this information to make informed
breeding decisions.
Jerold S. Bell, D.V.M., clinical assistant professor of genetics
at Tufts University School of Veterinary Medicine, says that
when there is no genetic test for carriers of an undesired
genetic trait, the most objective tool for selection against
recessive disorders is a relative-risk pedigree analysis.
Several factors are important for relative-risk pedigree
analysis to be effective, Bell says. Relative-risk analysis is
only as good as these factors:
The mode of inheritance must be proven to be recessive.
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The pedigree information must be accurate and verifiable.
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There must be an established open health registry database, such as
the American Kennel Club Canine Health Foundation’s Canine Health
Information Center (CHIC), that records the confirmed affected and
carrier status of dogs.
Relative-risk analysis does not identify carriers, just risk. “Through
pedigree analysis, you can lower your chance of producing carriers with
each generation, but you must limit the number of breedable offspring,
so as to not increase the carrier risk of the population,” Bell says.
“If a breeding female has X amount of risk of being a carrier, breeding
it to a low-risk mate can cut the carrier risk up to 1/2 X in the
offspring,” he says. ”However, if you breed three offspring, then you
have added three times 1/2 X into the population. With relative-risk
assessment, you have to combine the analysis with replacing the
higher-risk parent and limiting the number of reproducing offspring.”
For a defective recessive gene to be passed on, there must be a carrier
parent in each generation. However, unless the ancestral carriers have
produced affected offspring or were the offspring of affected dogs, they
cannot be identified. If four generations separate the carrier sire and
an obligate carrier ancestor, then it is possible the shared ancestors
between them could be carriers.
Bell provides these statistics:
The parent of an affected dog has a 100 percent chance of being a
carrier.
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The offspring of an affected dog has a 100 percent chance of being a
carrier.
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The clinically normal full sibling of an affected dog has a 67
percent chance of being a carrier.
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The clinically normal full sibling of a carrier has a 50 percent
chance of being a carrier.
This information enables a breeder to assign risk factors to dogs within
a pedigree and determine the risk of producing a carrier or affected dog
in the next generation. The goal of this analysis is to plan matings
that have carrier risk below the average of the breeding population.
This also will help to lower the carrier rate for the breed.
It also is possible to find out what the average carrier rate is for a
particular trait in a particular breed. "For an individual breeder, this
is going to be more difficult, though not impossible,” Bell says. “For a
breed-wide relative risk pedigree analysis program, it would not be as
difficult. There are statistically sound methods to compute average risk
without having to account for all breeding dogs."
For example, a breeder can make a crude calculation of the average
coefficient for a breeding population by using catalogs from national
breed specialties for the last two or three years. These specialties are
normally held in different parts of the country each year, so
participants in the shows theoretically provide a good cross section of
dogs in the breeding population. The pedigrees of these dogs can then be
evaluated based on the information available for a specific recessive
trait.
Even without a breed average, a breeder can still calculate risk factors
for several different prospective breedings, then compare the risk
factors and use this information along with other selection factors of
importance.
Here are formulas to calculate a dog's relative risk.
To determine affected risk:
1/2 of the sire's carrier risk x 1/2 of the dam's carrier risk = dog's
affected risk
To determine carrier risk:
1/2 of sire's carrier risk + 1/2 of dam's carrier risk – computed
affected risk = carrier risk
It isn't always
easy to get accurate information about dogs for pedigree evaluation.
Unfortunately, not all breeders are forthright with genetic information
for fear that admitting a carrier or affected dog may blacklist one's
bloodline or kennel. However, reporting this information to open health
registry databases is the only way these genetic problems can be reduced
or eliminated.
“This is why open health registries are important to the overall genetic
health of the breed,” Bell says. “The stigma of genetic disorders should
not prevent us from being informed and working together for the
betterment of the breed. While tests for carriers allow breeders to test
their own dogs, and not rely on knowledge of pedigree background, most
recessive disorders do not have tests for carriers.”
Open reporting of health information, through databases such as CHIC,
ultimately will provide the information necessary to perform objective
relative-risk pedigree analysis.
Breeders and owners must take an active part in the screening processes
for genetic traits in order for the incidence of these traits to be
reduced or, if possible, eliminated
from purebred dogs.
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